Basic Information
VIS ID
TVIS44026863
Fusion event
HTLV-1-LOC643339 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q22
Reference genome
GRCh37/hg19
Start
93510032/93116256 (Hg38)
End
93510032/93116256 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LOC643339
Nearest miRNA
hsa-let-7i/Upstream/6371107; hsa-mir-1178/Downstream/1445533;
Nearest TSS
ENST00000382841/Upstream/25734; ENST00000552584/Downstream/22835;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/186534, chr12-CpG: 85/Downstream/261433
Upstream sequence
gattgagaccaccctggctaatatggtgaaaccccatctctactaaaaatacaaaaaattagccgggcatggtggtgggcgcccgtagtcccagctactc
Downstream sequence
gggacgctaaggcaggagaatggcgtgaacccaggaggctgagcttgcagtgagccgagatcacaccactaaactccagcctgggtgacagagtgaaact
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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