Basic Information
VIS ID
TVIS44026878
Fusion event
HTLV-1-RPL35P7 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q33.3
Reference genome
GRCh37/hg19
Start
107091418/106439070 (Hg38)
End
107091418/106439070 (Hg38)
Orient
+
Location type
Intronic
Target gene
RPL35P7
Nearest miRNA
hsa-mir-1297/Upstream/4393066; hsa-mir-1267/Downstream/1092101;
Nearest TSS
ENST00000623511/Upstream/60960; ENST00000642447/Downstream/53078;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/3592657, chr13-CpG: 29/Downstream/53990
Nearby gene
EFNB2(-50661) ;
Upstream sequence
AGGCatgtatagatggacgaatggatgaatggatggatatatggatggatgaagggaggaagggagggatgggtgaaagaaggaaaggagggatgtatag
Downstream sequence
atggatggatggatggatggatggatggatggatCATTCGGCTTGTGGTATTGCAAGGCTGTTCAACACCTATAGAGAAAATTTCTTAGACCCATTACCT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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