Basic Information
VIS ID
TVIS44026880
Fusion event
HTLV-1-LINC00551 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q33.3
Reference genome
GRCh37/hg19
Start
107281358/106629010 (Hg38)
End
107281358/106629010 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LINC00551
Nearest miRNA
hsa-mir-1297/Upstream/4583006; hsa-mir-1267/Downstream/902161;
Nearest TSS
ENST00000623511/Upstream/11200; ENST00000421601/Downstream/24906;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/60694, chr13-CpG: 48/Downstream/288817
Upstream sequence
TCATAAAGACATTGCTAGTTTAATCCTTTCATTCACATCACACATTTCTCCTATGTTGAGAAGATGTGCAGGCTATGGGCTGGAAGCTGACCATGGGCTG
Downstream sequence
GAAGCTGGCTTACTAGCTTTGCTGATGGGTAAGCATTTCTGATTTCTAGCTGAGATTGAAGGAAGAAAATGTGTCCCTATCAAAACTGTTCATTCTTTCT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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