Basic Information
VIS ID
TVIS44026891
Fusion event
HTLV-1-ATP11AUN integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q34
Reference genome
GRCh37/hg19
Start
113302201/112647887 (Hg38)
End
113302201/112647887 (Hg38)
Orient
-
Location type
Intronic
Target gene
ATP11AUN
Nearest miRNA
hsa-mir-1267/Upstream/2306858; hsa-mir-4502/Downstream/615033;
Nearest TSS
ENST00000623511/Upstream/843; ENST00000419448/Downstream/41928;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/41276, chr13-CpG: 20/Downstream/1105
Upstream sequence
gcgccaccatgaccggctaattgttgtattttttagtagagacagggtttcaccatgttggccaggcttatctcaaactcatgacctcatgatccgcttg
Downstream sequence
cctcagcctcccagagtagtgggattacaggcgtgagccaccgtgccACGCCTCCTTGCTTAATTCTTAAAAGGCCTGATTGAGTTACGGATTTAACAAC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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