Basic Information
VIS ID
TVIS44026899
Fusion event
HTLV-1-TPTE2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q12.11
Reference genome
GRCh37/hg19
Start
20020944/19446804 (Hg38)
End
20020944/19446804 (Hg38)
Orient
-
Location type
Intronic
Target gene
TPTE2
miRNAs that regulate target gene
hsa-mir-148b-3p
Nearest miRNA
hsa-mir-1267/Downstream/986974;
Nearest TSS
ENST00000623511/Upstream/37275; ENST00000438640/Downstream/56430;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/101723, chr13-CpG: 17/Downstream/113322
Nearest cancer related gene
TPTE2(TSG, No orient, 0)
Upstream sequence
ctgaggtgggtggatcacttgagtccaggagttcaagaccagtctgggcaacacagtgagaccctgtctctataaaaaatacaaaaattagccaggcatg
Downstream sequence
gtgatgctcacctgtagtcccacctactcagaggggctgagatgggaggatcgcttgagccccaggaggttcaggctgcaatgagctgagatcatgccac
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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