Basic Information
VIS ID
TVIS44026906
Fusion event
HTLV-1-LOC105370108 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q12.11
Reference genome
GRCh37/hg19
Start
22637385/22063246 (Hg38)
End
22637385/22063246 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105370108
Nearest miRNA
hsa-mir-4499/Upstream/1629400; hsa-mir-1267/Downstream/2099170;
Nearest TSS
ENST00000623511/Upstream/22271; ENST00000611481/Downstream/44224;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/387630, chr13-CpG: 30/Downstream/633195
Nearby gene
LINC00540(No orient, 147039)
Upstream sequence
AATGGAAATTCAAAATTTAAACTTACTTAGGAGAAAGGGTTTTAATCATACAACTTAGAATATTCTTCTTTCCACGCTTTCTGAGATGTTGCTAAGTAAA
Downstream sequence
GGAAAGCTAATAGCCAGAGAAGATGTAGGGAAGTGTTCCTGACCAGGCACTGGGGGCCCTGTCTTGTTCCTAACTAACTGTACTGGTCATGATaatgttt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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