Basic Information
VIS ID
TVIS44026930
Fusion event
HTLV-1-MIR548F5 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
36308309/35734172 (Hg38)
End
36308309/35734172 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
MIR548F5
Nearest miRNA
hsa-mir-2276/Upstream/11571668; hsa-mir-1267/Downstream/3929862;
Nearest TSS
ENST00000623511/Upstream/36445; ENST00000379848/Downstream/59307;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/255190, chr13-CpG: 75/Downstream/396731
Upstream sequence
CTATCTTGTTTCTTCTGTTCTGTGCAACTGTGGGAAGACAACACAGCCAATGCCACTTTAAGCTCTTGTTTCTTTTCTTTAGGCAATGTTCGAGCTTTCA
Downstream sequence
CACTTTCTTCTTAGCGCCCTGAACTGCTAATTTCTTTCTGCTTCAATGAAACATACTTGTCAGTGCTCACGAAATGAACCTTTCTGCCCTGTCCACTCCT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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