Basic Information
VIS ID
TVIS44026932
Fusion event
HTLV-1-ANKRD26P2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
39484461/38910324 (Hg38)
End
39484461/38910324 (Hg38)
Orient
+
Location type
Intronic
Target gene
ANKRD26P2
Nearest miRNA
hsa-mir-2276/Upstream/14747820; hsa-mir-1267/Downstream/753710;
Nearest TSS
ENST00000623511/Upstream/82754; ENST00000473371/Downstream/80535;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/222162, chr13-CpG: 49/Downstream/127227
Nearby gene
FREM2(+23194) ;
Upstream sequence
TTGGTTTTTTCACTCTTCATTCCTGtattcagcaaccatgtgacaataagcagtggagttacaagatgaagatgaacagttcacttctcaaaaatcgtat
Downstream sequence
gatacaacctgaaaaaacaaacaggcaatttctttacagaatcatagataccatgacaggtataaaacaggacactattggaacacacagaagggacacc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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