Basic Information
VIS ID
TVIS44026942
Fusion event
HTLV-1-LPAR6 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q14.2
Reference genome
GRCh37/hg19
Start
49000604/48426468 (Hg38)
End
49000604/48426468 (Hg38)
Orient
-
Location type
Intronic
Target gene
LPAR6
Nearest miRNA
hsa-mir-2276/Upstream/4230268; hsa-mir-1267/Downstream/1569947;
Nearest TSS
ENST00000623511/Upstream/10652; ENST00000480491/Downstream/439;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/106747, chr13-CpG: 96/Downstream/105807
Upstream sequence
TCATGTGATGCATTTGGTATGCCTTTTTTAGCACTGCTAATGTACAGCCAATTTAAATCAAATAGACATAGGCTTTGCTTATAAAAACCACATATATTTC
Downstream sequence
TAAGTTAGTTTGCTTGGTGGTTAACACATTGCATATTGCATTAGTCTTAATATCCTCTAATGTTGGAGCTAGCACTGGATCCTAGAAATTCAGAATAAAA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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