Basic Information
VIS ID
TVIS44026958
Fusion event
HTLV-1-LOC105370245 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q21.32
Reference genome
GRCh37/hg19
Start
66628797/66054665 (Hg38)
End
66628797/66054665 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA13B
Target gene
LOC105370245
Nearest miRNA
hsa-mir-1297/Upstream/88236; hsa-mir-1267/Downstream/163585;
Nearest TSS
ENST00000623511/Upstream/188491; ENST00000430861/Downstream/249206;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/2210119, chr13-CpG: 92/Downstream/1175711
Nearby gene
MIR548X2(-88236) ;
Upstream sequence
TGTGACAAGACATAAATTCTTAAAATGTGTTTTATTTTTCCATGAAATGTATATACCTCTTTTCTTAAAAAGCCCTGCAGTATGCTAAGATTACTTGTCA
Downstream sequence
CTGTCttagtcaacaaatattcatttagtatctgccatatgccagacactgttttaggtaaagaggattcagcagagaacaaaacagaaaaacagaccaa
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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