Basic Information
VIS ID
TVIS44026960
Fusion event
HTLV-1-PCDH9 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q21.32
Reference genome
End
67011653/66437521 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-1297/Upstream/219197; hsa-mir-1267/Downstream/11260491;
Nearest cancer related gene
PCDH9(TSG, No orient, 0)
Upstream sequence
aaaaaGGAGAGAAAACAAAGGTAGTGTCTGAAATGTCAAGATATACTTTGAAAATAAACAGAAAAGGGTAGCAAAGAGGAGTAGGATTCTTATCACATAC
Downstream sequence
ATCAAAAAAATCAGTGGCtgaaaagatgctcaataaaattagccatcaaggaaatataaataaaattacaatgaaatagtttatataccaacagtatggc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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