Basic Information
VIS ID
TVIS44026989
Fusion event
HTLV-1-LOC105370302 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q31.2
Reference genome
GRCh37/hg19
Start
88035679/87383424 (Hg38)
End
88035679/87383424 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105370302
Nearest miRNA
hsa-mir-1297/Upstream/9685308; hsa-mir-1267/Downstream/235241;
Nearest TSS
ENST00000623511/Upstream/471506; ENST00000325089/Downstream/63811;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/3503662, chr13-CpG: 121/Downstream/287890
Nearby gene
MIR4500HG(-60563) ;
Upstream sequence
acatcagatagcaagaaagctatcagtgtttatggggtactatcaaaatgttaaaacaagaaactgaaaagatttctgctgtcaaatatgacatcatttg
Downstream sequence
agctcatcaaatacaataattgcgacaaattacaacatatgtgttcaaatccattagtttataatgattattaaaatattaacaatttcagcattttcaa
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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