Basic Information
VIS ID
TVIS44027016
Fusion event
HTLV-1-TDRD9 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q32.33
Reference genome
GRCh37/hg19
Start
104475881/104009544 (Hg38)
End
104475881/104009544 (Hg38)
Orient
-
Location type
Intronic
Target gene
TDRD9
Nearest miRNA
hsa-mir-1185-1/Upstream/1469818; hsa-mir-12121/Downstream/107861;
Nearest TSS
ENST00000550708/Upstream/4388; ENST00000481318/Downstream/39874;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/80647, chr14-CpG: 66/Downstream/75985
Upstream sequence
gcttatggtgaatgcagattgcaggactggaagtggttctgggtgagtcagtgagtgagtggtgagggaatgtgaaggcccaggacaccactgcacatga
Downstream sequence
ctgtagactataaacagtgcagacttgggctacactaagttcataaaaatttttaaaaaattaattgtagcttaatataactttttttaacttgataaac
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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