Basic Information
VIS ID
TVIS44027019
Fusion event
HTLV-1-IGH integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q32.33
Reference genome
GRCh37/hg19
Start
106102319/105635982 (Hg38)
End
106102319/105635982 (Hg38)
Orient
+
Location type
Intronic
Target gene
IGH
Nearest miRNA
hsa-mir-1185-1/Upstream/14802; hsa-mir-4507/Downstream/4186;
Nearest TSS
ENST00000550708/Upstream/9916; ENST00000414005/Downstream/8808;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/35117, chr14-CpG: 57/Downstream/36335
Nearby gene
MIR8071-2(No orient, 4186)
Upstream sequence
GCGTGGCCCCCATGTGTGGCAGGCATTGTCGCGTGGCCCCCGTTCGTGGCAGGCATGTGCAGCCTGAGTACCATGCCAGATGGGGTGTTCTGTCTTCTCC
Downstream sequence
AGGCCTGGCCCTGCCGTGTGAGCAGGGAGCTTCCCCATGGGACTGATGTTCTGTCTCCTCCAGGCCTGGCTCTGTCCTGCCATGTTAGCAGTGACCTTGG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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