Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene206446972058289220609795205835592060988420587644206071372055609320560931205777392057958820559099205600242059019320590823205722282057276720564662205648112058034220580491205851132058517220587715205877742059076020590819205918432059189920600395
Basic Information
VIS ID
TVIS44027027
Fusion event
HTLV-1-LOC254028 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
21068554/20600395 (Hg38)
End
21068554/20600395 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LOC254028
Nearest miRNA
hsa-mir-1185-1/Downstream/422919;
Nearest TSS
ENST00000550708/Upstream/9572; ENST00000336811/Downstream/9400;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/139088, chr14-CpG: 28/Downstream/9321
Upstream sequence
GAACCAgactatgtggctgcagcatgagctgtggtacccggtggcagaggcgctgcttggatgcgccccagtggaaacatgggaggcagtggacaggtct
Downstream sequence
cccacaagtgtgaagaaggcactgaagcaactggaagctcacaccaccaagaaggggtgcaccttcgccagcagagttggatgggcatttctgactgcac
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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