Basic Information
VIS ID
TVIS44027029
Fusion event
HTLV-1-DHRS4L2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
24459571/23990362 (Hg38)
End
24459571/23990362 (Hg38)
Orient
-
Location type
Intronic
Target gene
DHRS4L2
Nearest miRNA
hsa-mir-208a/Upstream/572299; hsa-mir-1185-1/Downstream/153127;
Nearest TSS
ENST00000550708/Upstream/71; ENST00000560276/Downstream/4735;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/20125, chr14-CpG: 53/Downstream/16466
Upstream sequence
CCAGGCGGTGGCCACGCTGCAGGGGGAGGGGCTGAGCGTGACGGGCACTGTGTGCCATGTGGGGAAGGCGGAGGACCGGGAGCGGCTGGTGGCCATGGTG
Downstream sequence
AGCTGCAGGGAAATGGGCACAGAGCCAGGAGGTGGAAAAGGAAGCCAGCCTGAGCCTCCTTCCCTGCTTTCCTAGACAGCAGCACATTTTTACTGTGTGC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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