Basic Information
VIS ID
TVIS44027033
Fusion event
HTLV-1-LINC02286 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q12
Reference genome
GRCh37/hg19
Start
25600273/25131067 (Hg38)
End
25600273/25131067 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC02286
Nearest miRNA
hsa-mir-208a/Upstream/987502; hsa-mir-1185-1/Downstream/1777575;
Nearest TSS
ENST00000550708/Upstream/4069; ENST00000547786/Downstream/1012238;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/80661, chr14-CpG: 30/Downstream/1073890
Nearby gene
STXBP6(-80770) ;
Upstream sequence
AAAAACATTGGTTCAGGATCATTTCTACTTATCCTTTTCTTTCCAGGTAAAAGAAATCTTTACCTGGGTCTAGACCAGCAAAAGCTCTTTGAAGCAGGAG
Downstream sequence
ATACACATCACTGGGTACGGCTGGTTCTCAAACATGCACTTGATTTTATTCACAAGTCTTACAAATCATCACATGCCCAAAGAAACACCTAGGTGAACTA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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