Basic Information
VIS ID
TVIS44027040
Fusion event
HTLV-1-LOC112267868 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q12
Reference genome
GRCh37/hg19
Start
30883458/30414252 (Hg38)
End
30883458/30414252 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC112267868
Nearest miRNA
hsa-mir-208a/Upstream/2780974; hsa-mir-1185-1/Downstream/600394;
Nearest TSS
ENST00000550708/Upstream/117209; ENST00000555429/Downstream/59818;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/486038, chr14-CpG: 59/Downstream/144675
Nearby gene
G2E3(+144871) ;
Upstream sequence
AAATATTCTGTGCAGAGTCAAGCTCACAGTCTCCATATGTAGACATCAGTCTTTCACGGCCTCCACCTTAGCTTCTATCATCCCATTCTATATCCATTTT
Downstream sequence
GGCCAGGTCTACCATGAACTGTTCATTTTAATTCAATGGTCCCTTTACCAACCAATACAGATAGAGCACCAGATATAGCTGCTTTCTGAGAGAAAACATC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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