Basic Information
VIS ID
TVIS44027058
Fusion event
HTLV-1-LOC100313942 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
39676308/39207104 (Hg38)
End
39676308/39207104 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC100313942
Nearest miRNA
hsa-mir-208a/Upstream/2254713; hsa-mir-1185-1/Downstream/8553891;
Nearest TSS
ENST00000550708/Upstream/28014; ENST00000555143/Downstream/23127;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/31286, chr14-CpG: 101/Downstream/59494
Nearby gene
PNN(+23886) ;
Upstream sequence
acaatcctaaacatatatgcacctaacattggagctcccaaatttataaaacaattattaatagacctaagaaatgagatagacagcaacacaataatag
Downstream sequence
tgggggacttcagtactccactgacagcactagacaggtcaagacagaaagtcaacaaagaaacaatggatttaaactataccttggaacaaatggactt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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