Basic Information
VIS ID
TVIS44027075
Fusion event
HTLV-1-LINC00871 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
46845341/46376138 (Hg38)
End
46845341/46376138 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LINC00871
Nearest miRNA
hsa-mir-208a/Upstream/9423747; hsa-mir-1185-1/Downstream/1384857;
Nearest TSS
ENST00000550708/Upstream/311979; ENST00000556071/Downstream/95221;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/1122539, chr14-CpG: 30/Downstream/275527
Upstream sequence
tcgactttggagaactcgatgattatgtgtcttgggggttgatcttctcttggagtatcttaatggtgttctctgtatctcctgaatttgcatgttggcc
Downstream sequence
tgtcttgctagataggggaagttctcctggataatattctgaagtgtgtcttccagcttgtttccattctccctgtctccttctggtactccaatcaatt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate