Basic Information
VIS ID
TVIS44027078
Fusion event
HTLV-1-LOC105378178 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
49238475/48769272 (Hg38)
End
49238475/48769272 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105378178
Nearest miRNA
hsa-mir-208a/Upstream/1008168; hsa-mir-1185-1/Downstream/1197127;
Nearest TSS
ENST00000550708/Upstream/277505; ENST00000557531/Downstream/308233;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/1092886, chr14-CpG: 30/Downstream/816660
Nearby gene
RPS29(-804915) ;
Upstream sequence
aatctaATAAAATTCCTATGCCTTAGAGCTTAGGTTTTCTATACTTCAGTCACATAAGGTGCTGGTTAACTTGCAGATCTCAGGACTTTATTTAAAGGTG
Downstream sequence
TTTTATGGTCCACAGATCACTTTAAACATGGCTTTAGGAAGTCTTTCATGAATATTGTATGAGGTAGAAAGATATTCAGATGAAAAAAGTGGAAACTTAA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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