Basic Information
VIS ID
TVIS44027089
Fusion event
HTLV-1-SLC35F4 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
58342749/57876031 (Hg38)
End
58342749/57876031 (Hg38)
Orient
+
Location type
Intronic
Target gene
SLC35F4
miRNAs that regulate target gene
hsa-mir-128-3p
Nearest miRNA
hsa-mir-208a/Upstream/2997838; hsa-mir-1185-1/Downstream/1770931;
Nearest TSS
ENST00000550708/Upstream/9969; ENST00000556243/Downstream/106032;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/9628, chr14-CpG: 75/Downstream/275542
Nearby gene
SLC35F4(-10157) ;
Upstream sequence
TTGATAGAATTCCTGGGTTCTAGATTAGCAAAGCAATCTTCCAACCATGGGTTAACAGAAGCAATGTGGAAGTAACTTCATTAAGCAAAATCTGGCATTA
Downstream sequence
AAAGGTTACCTGCAACAACGAGATTTGGTCTGAATAGAAACTGCAACCTTTTGCATGACATGTAATTCCAAACCTTTTGACTTCAAAATGGGGAGGAAGG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate