Basic Information
VIS ID
TVIS44027090
Fusion event
HTLV-1-LINC01500 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
59370163/58903445 (Hg38)
End
59370163/58903445 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA14B
Target gene
LINC01500
Nearest miRNA
hsa-mir-208a/Upstream/4025252; hsa-mir-1185-1/Downstream/743517;
Nearest TSS
ENST00000550708/Upstream/9279; ENST00000556596/Downstream/285201;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/256523, chr14-CpG: 130/Downstream/284467
Upstream sequence
tcctccagaccccagaatggtagatccactgatagcttgcactgtacacctagaatagccacaggcacccagcctgtgaaggagctgcttaaggccatag
Downstream sequence
gaacccatcccttgcatcagtgtgccctggatgtgagacatggagtcaaaggagatcattttagaggtttaatgactgccctgctggattttggacttgc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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