Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene6249118762428295624294516245703862457323624456436244581262459741
Basic Information
VIS ID
TVIS44027097
Fusion event
HTLV-1-LOC105370529 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q23.2
Reference genome
GRCh37/hg19
Start
62926459/62459741 (Hg38)
End
62926459/62459741 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA14B
Target gene
LOC105370529
Nearest miRNA
hsa-mir-208a/Upstream/1811030; hsa-mir-1185-1/Downstream/1635283;
Nearest TSS
ENST00000550708/Upstream/319768; ENST00000557133/Downstream/585445;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/342180, chr14-CpG: 96/Downstream/585548
Nearby gene
KCNH5(-246832) ;
Upstream sequence
ccattgcctaacccagggtcacaatgatttgctcctgtttaatttttaggagttttagttatttgttcttaaagttcaatttgttatctatttgtagtta
Downstream sequence
agtttttgtatgattgaggtgggttccaaatccattcttttttatgtgcatatccagttgttccatcatatttgttgaagagattatcctttttccattg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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