Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene729799327261929672894116727866967279002372780428727827107279299372795192727907247279289372752871727544667277417572775637727763917277776872798241727993637279707372797242727715937277174272799614
Basic Information
VIS ID
TVIS44027113
Fusion event
HTLV-1-DPF3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
73266322/72799614 (Hg38)
End
73266322/72799614 (Hg38)
Orient
-
Location type
Intronic
Target gene
DPF3
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-6873-3p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-3615 ; hsa-mir-6872-5p ; hsa-mir-6814-3p ; hsa-mir-3613-3p ; hsa-mir-373-3p ; hsa-mir-4446-5p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-623 ; hsa-mir-942-5p ; hsa-mir-5088-3p ; hsa-mir-576-5p ; hsa-mir-3920 ; hsa-mir-29a-5p
Nearest miRNA
hsa-mir-208a/Upstream/282716; hsa-mir-1185-1/Downstream/959133;
Nearest TSS
ENST00000550708/Upstream/56903; ENST00000510612/Downstream/36869;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/866777, chr14-CpG: 165/Downstream/92467
Upstream sequence
gcatggtgatgcacacctgtagtcccagctactctagaggctgaggtaagaggatcgcttgagcccagtgagccacgattgcaccacagcactccaacct
Downstream sequence
gggcaacagagcaagatcATATATGTATATATATATATATGAGAAAGAGACCCACATCCCTTAGTGATCCGTTCAAGagtgatcagttcaagggtgaaaa
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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