Basic Information
VIS ID
TVIS44027117
Fusion event
HTLV-1-LOC105370572 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
75985620/75519277 (Hg38)
End
75985620/75519277 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105370572
Nearest miRNA
hsa-mir-208a/Upstream/1039073; hsa-mir-1185-1/Downstream/1746941;
Nearest TSS
ENST00000550708/Upstream/87143; ENST00000555795/Downstream/3148;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/90631, chr14-CpG: 28/Downstream/27210
Nearby gene
BATF(+3164) ;
Upstream sequence
GGtaaaaagtttaaaatcctgcaggacaatattatatattgcttaggcatacatacaggtttggttcaagtatagaaaaatgcataagaatgataaaccc
Downstream sequence
cacatctggataatgggttacctggggtggggaggaagcggaattagaaagggatgaaggaagcttcggctctattcataatttatttcttcagcttaat
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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