Basic Information
VIS ID
TVIS44027132
Fusion event
HTLV-1-LINC00911 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
85874871/85408527 (Hg38)
End
85874871/85408527 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LINC00911
Nearest miRNA
hsa-mir-1260a/Upstream/8142237; hsa-mir-1185-1/Downstream/8539699;
Nearest TSS
ENST00000550708/Upstream/14579; ENST00000553678/Downstream/108407;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/3874437, chr14-CpG: 45/Downstream/121623
Upstream sequence
cttgactgattaagaactctggcaaatcctgacccctcctcatgagcacgtggcagctctcagctggagaagaagggcagcagcaccacttggatgaatg
Downstream sequence
tgttcatcaatgtgtgctacCAGGCCTGTATCATAGTATCCAAATGATTTCTCTAGGGCTTTAATTTCATGTCTTGCCCCACACTAAAATGATGCCTAAA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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