VISDB Viral Integration Site DataBase

VIS ID

TVIS44027143

Fusion event

HTLV-1-SLC24A4 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr14

Cytoband

q32.12

Reference genome

Start

End

92854631/92388287 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-561-5p ; hsa-mir-6828-5p ; hsa-mir-3166 ; hsa-mir-4302 ; hsa-mir-1324 ; hsa-mir-6830-5p ; hsa-mir-27b-5p ; hsa-mir-556-5p ; hsa-mir-4733-5p ; hsa-mir-944 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-4316 ; hsa-mir-196a-3p ; hsa-mir-661 ; hsa-mir-3188 ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-2467-5p ; hsa-mir-3975 ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-939-3p ; hsa-mir-6849-3p ; hsa-mir-759 ; hsa-mir-4797-5p ; hsa-mir-5586-3p ; hsa-mir-6851-3p ; hsa-mir-5008-5p ; hsa-mir-6089 ; hsa-mir-766-3p ; hsa-mir-508-5p ; hsa-mir-4668-5p ; hsa-mir-3613-3p ; hsa-mir-548ay-3p ; hsa-mir-548at-3p ; hsa-mir-548as-3p ; hsa-mir-548t-3p ; hsa-mir-548ap-3p ; hsa-mir-548aa ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-5699-3p ; hsa-mir-4421 ; hsa-mir-339-5p ; hsa-mir-10b-5p ; hsa-mir-10a-5p ; hsa-mir-510-3p ; hsa-mir-18b-3p ; hsa-mir-3664-3p ; hsa-mir-4509 ; hsa-mir-4768-3p ; hsa-mir-4695-5p ; hsa-mir-510-5p ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-7703 ; hsa-mir-6807-5p ; hsa-mir-593-5p ; hsa-mir-658 ; hsa-mir-6499-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-4793-3p ; hsa-mir-1273g-3p ; hsa-mir-4459 ; hsa-mir-183-5p ; hsa-mir-4662b ; hsa-mir-4647 ; hsa-mir-4426 ; hsa-mir-665 ; hsa-mir-6771-5p ; hsa-mir-7977 ; hsa-mir-566 ; hsa-mir-3622b-5p ; hsa-mir-6720-3p ; hsa-mir-4722-5p ; hsa-mir-1827 ; hsa-mir-20b-3p ; hsa-mir-4649-3p ; hsa-mir-6746-5p ; hsa-mir-1247-3p ; hsa-mir-5690 ; hsa-mir-2114-5p ; hsa-mir-5588-3p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-5197-5p ; hsa-mir-140-3p ; hsa-mir-3914 ; hsa-mir-4310 ; hsa-mir-4433a-3p ; hsa-mir-6715a-3p ; hsa-mir-6776-3p ; hsa-mir-6801-5p ; hsa-mir-7157-5p ; hsa-mir-873-5p ; hsa-mir-1270 ; hsa-mir-1292-3p ; hsa-mir-4252 ; hsa-mir-4683 ; hsa-mir-620

Nearest miRNA

hsa-mir-1260a/Upstream/15121997; hsa-mir-1185-1/Downstream/1559939;

Nearest TSS

Nearest CpG islands

None/Target, chr14-CpG: 35/Upstream/63919, chr14-CpG: 141/Downstream/125095

Upstream sequence

cctccccttggcaTCTGCCTTGTACTGTTTTCCTCTCTTAAGGCCCGTTAAAGCCTGAGAGACCACACAAGGACCTGTGTGTGAGATTTAAGGTGTGACG

Downstream sequence

CATAAAGGAGATGCCCAAGGGGTGTCCCTTCGCACCTCGAGACGGATTCCCAGTGGTGGGACTCAGGGTGGGTCTTCCCCAGGACCTGGGAGTGAGGTCT