Basic Information
VIS ID
TVIS44027155
Fusion event
HTLV-1-LINC02299 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
97219945/96753608 (Hg38)
End
97219945/96753608 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC02299
Nearest miRNA
hsa-mir-1260a/Upstream/1615622; hsa-mir-1185-1/Downstream/3355811;
Nearest TSS
ENST00000550708/Upstream/12417; ENST00000555351/Downstream/43696;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/11660, chr14-CpG: 83/Downstream/43614
Nearby gene
VRK1(+43739) ;
Upstream sequence
tctgccccatgcctccctcctggcttctagtggctgccaggagtcctcggtgttcctgcctcgtgctgtgtcgctcccacctctacctccatcttcacat
Downstream sequence
ggccttctccgtgggccttcctgggtctctgtgttacatctccctctcctttctcttacaagggcacaagtcctagatccaggatgatctcatcttgaga
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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