Basic Information
VIS ID
TVIS44027164
Fusion event
HTLV-1-REREP3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
22552422/22264471 (Hg38)
End
22552422/22264471 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
REREP3
Nearest miRNA
hsa-mir-1268a/Upstream/39142; hsa-mir-10393/Downstream/933356;
Nearest TSS
ENST00000557528/Upstream/69154; ENST00000622895/Downstream/194432;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/5131, chr15-CpG: 109/Downstream/153024
Upstream sequence
ACACTTGCCTCATTTAGTTGAACACACATTTGAGTTTTGCTGTTTTCTACTGTGTTCTGGAGCACAGTTGTAGAAACTGGAAATTCTGTGTCATATTTGG
Downstream sequence
GTATGATGAGTAATATGATGGTATCATTTGTTCAAGTGCGAAGATAATTGCAGATAAGCATCTGCGTTAGTCTTGTCACTGCAGGTGAAGCTTACCGTTT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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