Basic Information
VIS ID
TVIS44027165
Fusion event
HTLV-1-LOC107984787 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
24193039/23947892 (Hg38)
End
24193039/23947892 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107984787
Nearest miRNA
hsa-mir-1268a/Upstream/385761; hsa-mir-10393/Downstream/1900855;
Nearest TSS
ENST00000557528/Upstream/35483; ENST00000563016/Downstream/27280;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/69607, chr15-CpG: 29/Downstream/479145
Nearby gene
PWRN4(No orient, 27255)
Upstream sequence
tgagccgagatcgcaccgctgcactccagcctgggacagagcgagactccgtctcaaaaaaaaaaaaaaaaagaaaaaaacaaaaAACAAAGAGGCAGGT
Downstream sequence
TAGTGTTCACATGGGGTGGTTCATGTACTTAAATACATCGTTTACGTCATTTCTAAGGCCATCCCTTCATCCTCAAGCTTGGTGCAAGATCACAGCCATG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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