Basic Information
VIS ID
TVIS44027167
Fusion event
HTLV-1-SNORD115-15 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
25457502/25212355 (Hg38)
End
25457502/25212355 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
SNORD115-15
Nearest miRNA
hsa-mir-1268a/Upstream/1650224; hsa-mir-10393/Downstream/636392;
Nearest TSS
ENST00000557528/Upstream/124694; ENST00000557558/Downstream/133676;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/256448, chr15-CpG: 143/Downstream/225893
Upstream sequence
AATTCCCATCAGGGAGGGATGGTTTCTCCAGGAGGGCGGCTTCCTTGGGAATCTTACCTGAGGAGGATGCCTTCCCTGAAGATCTGCAGGAATGACAATG
Downstream sequence
GTCCAGATAGCAAAGGGTTCCTTCAGCCCCATGCAGGACATCGCCCAGTTGAGACTTGGTGTGCAGGTCAGGCCTTGAGGACTGCCCAGGCCACATGAGG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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