VISDB Viral Integration Site DataBase

VIS ID

TVIS44027173

Fusion event

HTLV-1-KLF13 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr15

Cytoband

q13.3

Reference genome

Start

End

31694026/31401823 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-372-3p ; hsa-mir-302d-3p ; hsa-mir-125b-5p ; hsa-mir-31-5p ; hsa-mir-125a-5p ; hsa-mir-98-5p ; hsa-mir-335-5p ; hsa-mir-1200 ; hsa-mir-1257 ; hsa-mir-3163 ; hsa-mir-4324 ; hsa-mir-4329 ; hsa-mir-3662 ; hsa-mir-4452 ; hsa-mir-4524a-3p ; hsa-mir-892c-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-7113-5p ; hsa-mir-1-3p ; hsa-mir-206 ; hsa-mir-490-3p ; hsa-mir-613 ; hsa-mir-619-3p ; hsa-mir-6128 ; hsa-mir-8066 ; hsa-mir-4747-5p ; hsa-mir-5196-5p ; hsa-mir-766-5p ; hsa-mir-7515 ; hsa-mir-4518 ; hsa-mir-1266-5p ; hsa-mir-3664-3p ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-9500 ; hsa-mir-7851-3p ; hsa-mir-7106-5p ; hsa-mir-1289 ; hsa-mir-765 ; hsa-mir-4722-5p ; hsa-mir-6124 ; hsa-mir-6837-5p ; hsa-mir-4685-5p ; hsa-mir-4756-5p ; hsa-mir-4739 ; hsa-mir-1321 ; hsa-mir-6165 ; hsa-mir-6867-5p ; hsa-mir-6793-3p ; hsa-mir-378a-5p ; hsa-mir-630 ; hsa-mir-544b ; hsa-mir-506-5p ; hsa-mir-4435 ; hsa-mir-4663 ; hsa-mir-3194-5p ; hsa-mir-3670 ; hsa-mir-3190-5p ; hsa-mir-6858-3p ; hsa-mir-4438 ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-556-3p ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-2117 ; hsa-mir-6504-3p ; hsa-mir-148a-5p ; hsa-mir-6726-3p ; hsa-mir-4467 ; hsa-mir-566 ; hsa-mir-668-5p ; hsa-mir-18b-3p ; hsa-mir-6087 ; hsa-mir-4509 ; hsa-mir-1249-3p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-4695-5p ; hsa-mir-4755-5p ; hsa-mir-6823-3p ; hsa-mir-2114-3p ; hsa-mir-6501-3p ; hsa-mir-3614-3p ; hsa-mir-193a-5p ; hsa-mir-4251 ; hsa-mir-539-5p ; hsa-mir-541-3p ; hsa-mir-548az-5p ; hsa-mir-548t-5p ; hsa-mir-654-5p ; hsa-mir-6761-5p ; hsa-mir-6769a-5p ; hsa-mir-6769b-5p ; hsa-mir-92a-2-5p ; hsa-mir-1207-5p ; hsa-mir-2392 ; hsa-mir-4446-3p ; hsa-mir-4656 ; hsa-mir-4736 ; hsa-mir-4763-3p ; hsa-mir-6132 ; hsa-mir-6836-5p ; hsa-mir-6869-5p ; hsa-mir-7150 ; hsa-mir-8077

Nearest miRNA

hsa-mir-1268a/Upstream/336682; hsa-mir-10393/Downstream/2980246;

Nearest TSS

Nearest CpG islands

None/Target, chr15-CpG: 55/Upstream/4319, chr15-CpG: 51/Downstream/39055

Upstream sequence

ggccacactggtgcagggacctgaacgcagcagtgcagctccaaggtcTCTAGCTGTCCTCTggctgcatggcccacttcagcatgagggctgagtctcc

Downstream sequence

aagggcagtcccaagagaaccagcagacactgtctcaccatttgtgacccagcctcagaagccacatagcatcacttacctggagtggcacgcaagcctg