Basic Information
VIS ID
TVIS44027174
Fusion event
HTLV-1-LOC101928174 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q14
Reference genome
GRCh37/hg19
Start
35093540/34801339 (Hg38)
End
35093540/34801339 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LOC101928174
Nearest miRNA
hsa-mir-1233-1/Upstream/272968; hsa-mir-10393/Downstream/570917;
Nearest TSS
ENST00000557528/Upstream/5200; ENST00000560140/Downstream/61885;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/46128, chr15-CpG: 34/Downstream/168146
Upstream sequence
ggtgtgagccaccgtgcccagccCCaactgttctttgatatgatgtcaccagcctatgttgaggggctgtgtaagagtaggtcaccatctctattgtaag
Downstream sequence
gacattgtaaggatgttttcatggatgttcatcataggacacaatcttctttataagcctccttgggagaattccctgtctgactctggtaccaagggca
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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