Basic Information
VIS ID
TVIS44027180
Fusion event
HTLV-1-IVD integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q15.1
Reference genome
GRCh37/hg19
Start
40726169/40433970 (Hg38)
End
40726169/40433970 (Hg38)
Orient
-
Location type
Intronic
Target gene
IVD
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-503-5p ; hsa-mir-484 ; hsa-let-7e-5p ; hsa-let-7a-5p ; hsa-mir-619-5p ; hsa-mir-5089-5p ; hsa-mir-6513-5p ; hsa-mir-6728-5p ; hsa-mir-769-3p ; hsa-mir-450b-3p ; hsa-mir-937-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-3147 ; hsa-mir-4425 ; hsa-mir-5702 ; hsa-mir-6889-3p ; hsa-mir-1208 ; hsa-mir-6760-3p ; hsa-mir-6504-3p ; hsa-mir-4438 ; hsa-mir-640 ; hsa-mir-203b-3p ; hsa-mir-7158-3p ; hsa-mir-6821-3p ; hsa-mir-378a-5p ; hsa-mir-6790-3p ; hsa-mir-4635 ; hsa-mir-4680-5p ; hsa-mir-3653-5p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-6131 ; hsa-mir-3663-5p ; hsa-mir-6787-3p ; hsa-mir-1228-3p ; hsa-mir-4755-3p ; hsa-mir-6747-3p
Nearest miRNA
hsa-mir-1233-1/Upstream/3461069; hsa-mir-10393/Downstream/1257615;
Nearest TSS
ENST00000557528/Upstream/17803; ENST00000561464/Downstream/5751;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/50543, chr15-CpG: 188/Downstream/6760
Nearby gene
BAHD1(+5751) ;
Upstream sequence
TGGAGTGTGTTCAGTAAACATCTGCTCCTGGGGCAATAATGAAGGTACTATTAGAGATTGGCATGAGAATGCAACAGGGCTCTCTGAGTAGGTTCCAGTG
Downstream sequence
AACTAGACACTGCAAAGGGCTGCACCACGATACCCATCCATGTCTCTGTGGCCACAGTGCAGGGcaaggatcacacacctgaaaaccttcagggttcagg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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