Basic Information
VIS ID
TVIS44027184
Fusion event
HTLV-1-ADAL integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q15.3
Reference genome
GRCh37/hg19
Start
43624500/43332302 (Hg38)
End
43624500/43332302 (Hg38)
Orient
+
Location type
Intronic
Target gene
ADAL
Nearest miRNA
hsa-mir-1233-1/Upstream/1132636; hsa-mir-10393/Downstream/461357;
Nearest TSS
ENST00000557528/Upstream/327; ENST00000610420/Downstream/2636;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/1547, chr15-CpG: 89/Downstream/38105
Upstream sequence
agagttgtcagtttagtgtaaggCATTCAGATCTGATGGAACATTTGAGCAGTTTGAGAATTGCTTCTGAAGGGATTAGAAGAAGGGCTCACCTATGCCT
Downstream sequence
GCTGGGTCAGTGGATCCTCACCTCTAAAATGAGATTAAGTACTGCTTCGTGAGGTATCTCAGGGTTGATTGAGGGGCAAATAGAAAAAAAAAAAAAGTTG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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