Basic Information
VIS ID
TVIS44027215
Fusion event
HTLV-1-LOC101928907 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
62353448/62061249 (Hg38)
End
62353448/62061249 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA15A
Target gene
LOC101928907
Nearest miRNA
hsa-mir-10393/Upstream/2889987; hsa-mir-11181/Downstream/243409;
Nearest TSS
ENST00000557528/Upstream/735; ENST00000355522/Downstream/5728;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/356, chr15-CpG: 164/Downstream/6379
Nearby gene
VPS13C(-784) ;
Upstream sequence
TAGAATGAGAACTGAATATACGCGTTTTGTGGGAAACGCGTTCTTTTCCCCTTTCTCTAAGATTCGCTTTTAATTCACTAGCCACTAACCAGTTACCTAT
Downstream sequence
CTCATTACAGATATAAAAAACAAAACGTAGTAGTGCCTTTTTAAGTATGAGTTACTTGTTATTTATATATCACTTTCTTCCATGCTATCGTTGAACTGTC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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