Basic Information
VIS ID
TVIS44027230
Fusion event
HTLV-1-LINC02259 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
72923748/72631407 (Hg38)
End
72923748/72631407 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC02259
Nearest miRNA
hsa-mir-10393/Upstream/44094; hsa-mir-11181/Downstream/668503;
Nearest TSS
ENST00000557528/Upstream/15597; ENST00000568532/Downstream/5481;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/156055, chr15-CpG: 38/Downstream/5385
Nearby gene
GOLGA6B(+23290) ;
Upstream sequence
GTTCTGATGGGCTCCTCTCTCTCAATGACCGCACGTTatattatgtggccattcttacacgtttctgtatagacctgagggttagtgtattaatgtcaaa
Downstream sequence
gttctactggtttttcgaggctgggtggaatgtttgggttaatttaggagtgggcatcttgacaatataggcttttcctCCGGGAATGGTGATTCTGGGA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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