Basic Information
VIS ID
TVIS44027234
Fusion event
HTLV-1-LOC105376731 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
75520827/75228486 (Hg38)
End
75520827/75228486 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105376731
Nearest miRNA
hsa-mir-10393/Upstream/387779; hsa-mir-11181/Downstream/125125;
Nearest TSS
ENST00000557528/Upstream/16319; ENST00000300576/Downstream/30113;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/19670, chr15-CpG: 35/Downstream/107423
Nearby gene
C15orf39(No orient, 16317)
Upstream sequence
acacagGGATTGCAGCCCCGACTCACCATTGGCCACGATGCTGGATTTCTGGAGGATGGGATCTGTTATGTTTTGGGCCAAGTGATTAGCCAGGCCTTGG
Downstream sequence
AGGTGGGTAGTGATGGGAGTCTGGAACTTGTATTCGATATAAACACCCACCCACTGGTCCGCATTGCTAGAGAAGCACAAGGGGAGAGTGCAGAGGTCAC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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