Basic Information
VIS ID
TVIS44027242
Fusion event
HTLV-1-ARNT2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q25.1
Reference genome
GRCh37/hg19
Start
80883034/80590693 (Hg38)
End
80883034/80590693 (Hg38)
Orient
-
Location type
Intronic
Target gene
ARNT2
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-let-7e-5p
Nearest miRNA
hsa-mir-10393/Upstream/9454; hsa-mir-11181/Downstream/251285;
Nearest TSS
ENST00000557528/Upstream/10127; ENST00000560126/Downstream/88991;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/185642, chr15-CpG: 187/Downstream/104162
Upstream sequence
tagtcaggcaatgtggcatgagcctgtagtcccagctatgagggaggctgaggctggaggattggttgagcccaggatttcaaggctgaagtgagccatg
Downstream sequence
attgcaccactgcattccagccagggcagtggaataagactctttctcGTATGTAAAAAACCAATTCCACTTATGTTTCCTATTTTTTGTTTTCTTCCAT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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