Basic Information
VIS ID
TVIS44027262
Fusion event
HTLV-1-LOC105370991 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q26.2
Reference genome
GRCh37/hg19
Start
95643247/95100018 (Hg38)
End
95643247/95100018 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105370991
Nearest miRNA
hsa-mir-10393/Upstream/2195543; hsa-mir-1302-10/Downstream/1233243;
Nearest TSS
ENST00000557528/Upstream/64281; ENST00000554837/Downstream/32841;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/243423, chr15-CpG: 53/Downstream/226708
Nearby gene
LINC01197(No orient, 179272)
Upstream sequence
aatctctgtctgcttattagcttatactaaataaactgagcagacatcaggggccacacgtgacaaaaaacaatacaaactttaaagaaacaaggaaaat
Downstream sequence
tactaaataataactataaaaaagcagcaacaacaaaccatggtcagagataggatatgatttctagaggtaacacattacattatcttaaatatctaat
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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