Basic Information
VIS ID
TVIS44027267
Fusion event
HTLV-1-LOC400464 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q26.3
Reference genome
GRCh37/hg19
Start
100364323/99824118 (Hg38)
End
100364323/99824118 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC400464
Nearest miRNA
hsa-mir-10393/Upstream/1039616; hsa-mir-1302-10/Downstream/2136341;
Nearest TSS
ENST00000557528/Upstream/16130; ENST00000622345/Downstream/14512;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/16869, chr15-CpG: 297/Downstream/102157
Nearby gene
DNM1P46(-17191) ;
Upstream sequence
tttcatcatccaggtattgagtctagcacccattagttatttttcctgatgatctcccatctccctgtctccactctctgaaagtccccagtgtgtgttg
Downstream sequence
ttcccctctatgcgtccatgtgagttctcatcatttagctcctacttataagtgagaacatgtggtgtttggttttctgttcctgtgttagtttgctaag
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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