Basic Information
VIS ID
TVIS44027280
Fusion event
HTLV-1-UMOD integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
20360923/20349601 (Hg38)
End
20360923/20349601 (Hg38)
Orient
+
Location type
Intronic
Target gene
UMOD
Nearest miRNA
hsa-mir-1225/Upstream/1855025; hsa-mir-11401/Downstream/1156448;
Nearest TSS
ENST00000527434/Upstream/7092; ENST00000577173/Downstream/1570;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/425, chr16-CpG: 65/Downstream/391723
Upstream sequence
tagcctccaattcctgggttcaagcgttctactccctgagttcaagccaccaccgcaccctgcctcagcttcccaaaaagttgggaccacaggcacgtgc
Downstream sequence
aatcgcgcccagcTCCACCATTCATTTTTTGTGTTAAGCATTGCTTTCAAGCTGTCTTCTTTTAAAATAGCCACATTCAGAAAAGTAATGCGCAGAATTC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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