Basic Information
VIS ID
TVIS44027281
Fusion event
HTLV-1-OTOA integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p12.2
Reference genome
GRCh37/hg19
Start
21732839/21721518 (Hg38)
End
21732839/21721518 (Hg38)
Orient
+
Location type
Intronic
Target gene
OTOA
Nearest miRNA
hsa-mir-1225/Upstream/215383; hsa-mir-11401/Downstream/2481598;
Nearest TSS
ENST00000527434/Upstream/16549; ENST00000563506/Downstream/8053;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/57213, chr16-CpG: 25/Downstream/35571
Upstream sequence
actggcctctagtgggtagaggccaggggtggagctcaacatcctacaatgcgtaggacagcaccactacacagaggtacctggtcgaaaatgtcaataa
Downstream sequence
tactgaggtgagcaacTGTGTTTCAGAGGTAACTATAAAGAACAGTTTGCTATTACTTTTGAGAGTTTTCTTTTATATATAAAATATAggccggtcacaa
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate