Basic Information
VIS ID
TVIS44027282
Fusion event
HTLV-1-RRN3P3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p12.2
Reference genome
GRCh37/hg19
Start
22435314/22423993 (Hg38)
End
22435314/22423993 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
RRN3P3
Nearest miRNA
hsa-mir-1225/Upstream/917858; hsa-mir-11401/Downstream/1779123;
Nearest TSS
ENST00000527434/Upstream/48903; ENST00000356156/Downstream/7603;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/48829, chr16-CpG: 89/Downstream/12886
Upstream sequence
acgaacacacacgaacacatgcacacacgggcacacacacatgaacacacatgcacaatgtatacacagtgcatatgtgcacacatgcacatgaacacac
Downstream sequence
acatgcacacacacgcacatgaacacacacacatgcacacacacgtgcacacacatgTAGTCGTTTTAGGAACTAGACTGCCAGTTTATGAATTTGCAAT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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