Basic Information
VIS ID
TVIS44027295
Fusion event
HTLV-1-LOC101928595 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
30111065/30099744 (Hg38)
End
30111065/30099744 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC101928595
Nearest miRNA
hsa-mir-1225/Upstream/500479; hsa-mir-11401/Downstream/404175;
Nearest TSS
ENST00000527434/Upstream/2829; ENST00000566190/Downstream/7931;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/3190, chr16-CpG: 74/Downstream/23155
Nearby gene
YPEL3(-3528) ;
Upstream sequence
tcccaacccttacactattatcagcaaaatcccatatgatcaccagtggttcacaatgatagatttgaaagatgccagctgggcacggtggctcacacct
Downstream sequence
gtaatcctagcactttgggaggctgaggcgggcagactgcccgaactcaggagtttgcaaccagcctgggcaacacggtgaaaccccgtctctactaaaa
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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