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TVIS44027300
Basic Information
VIS ID
TVIS44027300
Fusion event
HTLV-1-STX1B integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
31004771/30993450 (Hg38)
End
31004771/30993450 (Hg38)
Orient
+
Location type
Exonic
Target gene
STX1B
miRNAs that regulate target gene
hsa-mir-330-5p
;
hsa-mir-8064
;
hsa-mir-6865-3p
;
hsa-mir-4643
;
hsa-mir-8485
;
hsa-mir-4638-3p
;
hsa-mir-4254
;
hsa-mir-3690
;
hsa-mir-3941
;
hsa-mir-5689
;
hsa-mir-1225-3p
;
hsa-mir-20a-3p
;
hsa-mir-4536-3p
;
hsa-mir-6767-3p
;
hsa-mir-6769a-3p
;
hsa-mir-6856-5p
;
hsa-mir-6758-5p
;
hsa-mir-4793-5p
;
hsa-mir-6783-3p
;
hsa-mir-1343-3p
;
hsa-mir-6742-3p
;
hsa-mir-6852-5p
;
hsa-mir-939-3p
;
hsa-mir-660-3p
;
hsa-mir-4667-3p
;
hsa-mir-3152-5p
;
hsa-mir-4642
;
hsa-mir-6836-3p
;
hsa-mir-3189-3p
;
hsa-mir-212-5p
;
hsa-mir-6891-3p
;
hsa-mir-6072
;
hsa-mir-545-5p
;
hsa-mir-802
;
hsa-mir-3143
;
hsa-mir-543
;
hsa-mir-1180-5p
;
hsa-mir-4802-3p
;
hsa-mir-5187-5p
;
hsa-mir-551a
;
hsa-mir-551b-3p
;
hsa-mir-6728-5p
;
hsa-mir-7114-3p
;
hsa-mir-942-3p
Nearest miRNA
hsa-mir-1225/Upstream/99465; hsa-mir-11401/Downstream/3170128;
Nearest TSS
ENST00000527434/Upstream/8234;
ENST00000478150/Downstream/3594;
Nearest CpG islands
None/Target,
chr16-CpG: 29/Upstream/12642
,
chr16-CpG: 43/Downstream/3852
Upstream sequence
CTCTCTACGAGCATGGCCATGTCCACAAACATATCGTGCAGCTCGCGGATGCTGGTCTCCAGCTTGATGATCTCATTGTGCCTCGTCTCAATCTCATTCA
Downstream sequence
GCGCCTGCTTCGTCATCTGTGAGTCCATTTTGATCTAGGGTGACGAGGGAGAGAGCTACAATCACCCTTCTCCGCCATGAGCGCCTCCACCGCAGTGgag
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Sample Information
×
Sample name
HTLV-1 carrier#1
Sample type
Nontumor
Gender
Female
CpG Island Information
×
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