Basic Information
VIS ID
TVIS44027301
Fusion event
HTLV-1-KAT8 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
31138723/31127402 (Hg38)
End
31138723/31127402 (Hg38)
Orient
+
Location type
Intronic
Target gene
KAT8
Nearest miRNA
hsa-mir-1225/Upstream/233417; hsa-mir-11401/Downstream/3036176;
Nearest TSS
ENST00000527434/Upstream/130; ENST00000573144/Downstream/3054;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/9509, chr16-CpG: 88/Downstream/14833
Upstream sequence
GAGTACTGCCTCAAGTACATGAAATATGAGAAGAGCTACCGCTTCCACTTGGTGAGGCTGGGCCGGCCGGGCCGAGCTGGGCAGGGGCCCGGTGAGAGGC
Downstream sequence
AGAGGCAGGCATGGAGACTGAGGGCGGCTGCGCCGGCAGCTCCAGGGAGGAGACAGGCCcaaaggagcgagtacagggaagagctgctgggggtcaggag
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate