Basic Information
VIS ID
TVIS44027303
Fusion event
HTLV-1-SLC5A2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
31499804/31488483 (Hg38)
End
31499804/31488483 (Hg38)
Orient
+
Location type
Exonic
Target gene
SLC5A2
miRNAs that regulate target gene
hsa-mir-6802-3p ; hsa-mir-3663-3p ; hsa-mir-4268 ; hsa-mir-6862-3p ; hsa-mir-6886-5p ; hsa-mir-6784-3p ; hsa-mir-4286 ; hsa-mir-484 ; hsa-mir-3155b ; hsa-mir-3155a
Nearest miRNA
hsa-mir-1225/Upstream/594498; hsa-mir-11401/Downstream/2675095;
Nearest TSS
ENST00000527434/Upstream/273; ENST00000567051/Downstream/9;
Nearest CpG islands
chr16-CpG: 177/Target, None/Upstream, None/Downstream
Upstream sequence
CGAGGTGGCGTGCGTGGTGCCTGAGGTGTGCAGGCGCGTGTGCGGCACGGAGGTGGGCTGCTCCAACATCGCCTACCCGCGGCTCGTCGTGAAGCTCATG
Downstream sequence
CCCAACGGTAAGGGCAGCCCCGGGCCACAGGCGCAAGCTCGCTGCGGAGCCCGCTGCTGGGAGGGGTCGTCCCTCGCGCAGCTGCAGCCGCCCTGGACCC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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