Basic Information
VIS ID
TVIS44027304
Fusion event
HTLV-1-OR1F1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
3254867/3204867 (Hg38)
End
3254867/3204867 (Hg38)
Orient
-
Location type
Exonic
Target gene
OR1F1
Nearest miRNA
hsa-mir-1225/Upstream/672862; hsa-mir-11401/Downstream/280514;
Nearest TSS
ENST00000527434/Upstream/620; ENST00000572123/Downstream/22938;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/11284, chr16-CpG: 76/Downstream/29772
Upstream sequence
CACTCACTTCTTCTGCGATGTGACTCCCCTACTGAAACTCTCCTGCTCAGACACACACCTCAATGAGGTCATAATCCTTAGTGAGGGTGCCCTGGTCATG
Downstream sequence
ATCACCCCATTTCTTTGCATCCTGGCTTCTTATATGCACATCACCTGCACTGTCCTGAAGGTCCCATCCACAAAGGGAAGGTGGAAAGCCTTCTCCACCT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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